SEED Subsystem: tRNA processing in Variovorax sp. OAS795

Experiments:

Role Gene Name L-Threonine (C)  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) ABID97_RS10070 -0.0
  ABID97_RS10545 +0.0
  ABID97_RS14355 +0.2
  ABID97_RS28155 +0.0
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) ABID97_RS02670 N.D.
Ribonuclease PH (EC 2.7.7.56) ABID97_RS23640 -0.1
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) ABID97_RS24120 +0.0
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) ABID97_RS00980 -0.2
  ABID97_RS06090 +0.3
  ABID97_RS08440 -0.1
tRNA pseudouridine synthase B (EC 4.2.1.70) ABID97_RS16475 +1.2
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase ABID97_RS06475 -0.5
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) No genes
tRNAHis-5'-guanylyltransferase No genes

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