SEED Subsystem: DNA Repair Base Excision in Variovorax sp. OAS795

Experiments:

Role Gene Name L-Histidine (C)  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC ABID97_RS00390 -0.1
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABID97_RS09860 +0.2
DNA ligase (EC 6.5.1.2) ABID97_RS15625 N.D.
DNA polymerase I (EC 2.7.7.7) ABID97_RS09180 -3.8
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABID97_RS16390 N.D.
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABID97_RS17840 +0.9
Endonuclease III (EC 4.2.99.18) ABID97_RS17315 -0.8
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) ABID97_RS16900 -1.6
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABID97_RS23725 -0.3
Ku domain protein ABID97_RS26700 +0.1
  ABID97_RS26710 +0.1
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABID97_RS22940 -1.6
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABID97_RS05285 -0.5

Or select organism:

Or view this subsystem at the SEED (slow)