SEED Subsystem: DNA-replication in Pseudomonas sp. RS175

Experiments:

Role Gene Name Inosine carbon 10 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) PFR28_04435 -0.1
ATP-dependent DNA helicase RecQ PFR28_00788 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA PFR28_03214 N.D.
  PFR28_04591 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) PFR28_03414 +0.1
DNA polymerase I (EC 2.7.7.7) PFR28_04624 +0.3
DNA polymerase II (EC 2.7.7.7) PFR28_01299 +0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) PFR28_00411 N.D.
  PFR28_01355 +0.2
  PFR28_03828 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) PFR28_04592 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) PFR28_03529 -0.1
DNA polymerase III delta prime subunit (EC 2.7.7.7) PFR28_03004 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) PFR28_03857 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) PFR28_01555 N.D.
  PFR28_04113 -1.2
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) PFR28_01074 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) PFR28_04077 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN PFR28_00071 -0.3
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) PFR28_00008 N.D.
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) PFR28_00007 -0.1
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) PFR28_00006 +0.1
Helicase PriA essential for oriC/DnaA-independent DNA replication PFR28_05002 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA PFR28_03413 -0.5
Holliday junction DNA helicase RuvB PFR28_03412 -0.5
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein PFR28_00472 -0.3
Recombination protein RecR PFR28_01077 -0.1
Replicative DNA helicase (EC 3.6.1.-) PFR28_05136 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PFR28_00339 +0.2
Transcription-repair coupling factor PFR28_01123 +1.7

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