SEED Subsystem: Aromatic amino acid degradation in Variovorax sp. OAS795

Experiments:

Role Gene Name D-Xylose (C)  
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-) No genes
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) ABID97_RS03755 +0.2
  ABID97_RS03760 +0.1
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) ABID97_RS03725 -0.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15) ABID97_RS27995 -0.1
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) ABID97_RS19690 -0.1
  ABID97_RS25360 -0.2
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) ABID97_RS03730 +0.2
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) ABID97_RS03745 +0.2
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) ABID97_RS03755 +0.2
  ABID97_RS03760 +0.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. ABID97_RS05835 -2.6
Anthranilate dioxygenase large subunit No genes
Anthranilate dioxygenase reductase No genes
Anthranilate dioxygenase small subunit No genes
Aromatic amino acid transport protein AroP No genes
Aromatic ring-opening dioxygenase No genes
Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) No genes
Homoprotocatechuate degradative operon repressor ABID97_RS03765 -0.0
  ABID97_RS08820 N.D.
Indoleacetamide hydrolase (EC 3.5.1.-) ABID97_RS11495 +0.2
  ABID97_RS25220 -0.1
Kynurenine formamidase, bacterial (EC 3.5.1.9) ABID97_RS08605 +0.2
Phenylalanine hydroxylase transcriptional activator PhhR No genes
Phenylalanine-4-hydroxylase (EC 1.14.16.1) ABID97_RS25370 -0.0
Phenylalanine-specific permease No genes
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase No genes
Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase No genes
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase No genes
Putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase oxidoreductase protein (EC 1.2.1.60) No genes
Putative fumarylacetoacetate (FAA) hydrolase No genes
Tryptophan 2,3-dioxygenase (EC 1.13.11.11) ABID97_RS08590 +0.1
Tryptophan 2-monooxygenase (EC 1.13.12.3) No genes
Tryptophanase (EC 4.1.99.1) No genes

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