SEED Subsystem: DNA-replication in Pseudomonas syringae pv. syringae B728a ΔmexB

Experiments:

Role Gene Name KB with Nitrofurantoin 31.25 ug/ml  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) Psyr_0201 -2.3
ATP-dependent DNA helicase RecQ Psyr_2914 -0.2
  Psyr_3738 -0.3
  Psyr_3804 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA Psyr_0001 N.D.
  Psyr_3686 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Psyr_1408 -0.8
DNA polymerase I (EC 2.7.7.7) Psyr_0270 -0.1
DNA polymerase II (EC 2.7.7.7) Psyr_2361 +0.1
DNA polymerase III alpha subunit (EC 2.7.7.7) Psyr_1358 N.D.
  Psyr_4300 -0.6
DNA polymerase III beta subunit (EC 2.7.7.7) Psyr_0002 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) Psyr_1090 -0.6
DNA polymerase III delta prime subunit (EC 2.7.7.7) Psyr_1653 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) Psyr_4354 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) Psyr_1764 N.D.
  Psyr_4703 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) Psyr_1825 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) Psyr_4640 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN Psyr_4197 -0.7
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) Psyr_0682 N.D.
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) Psyr_0681 N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) Psyr_0680 -0.4
Helicase PriA essential for oriC/DnaA-independent DNA replication Psyr_0398 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA Psyr_1409 -3.0
Holliday junction DNA helicase RuvB Psyr_1410 -1.2
Primosomal protein I Psyr_2810 +0.2
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein Psyr_1378 -3.2
Recombination protein RecR Psyr_3396 -2.5
Replicative DNA helicase (EC 3.6.1.-) Psyr_0585 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Psyr_1298 -0.5
Transcription-repair coupling factor Psyr_1896 -0.0

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