SEED Subsystem: DNA-replication in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name Putrescine (C)  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) PfGW456L13_772 -0.5
ATP-dependent DNA helicase RecQ PfGW456L13_4423 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA PfGW456L13_4249 N.D.
  PfGW456L13_666 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) PfGW456L13_1851 -0.9
DNA polymerase I (EC 2.7.7.7) PfGW456L13_594 -0.3
DNA polymerase II (EC 2.7.7.7) PfGW456L13_2472 +0.1
DNA polymerase III alpha subunit (EC 2.7.7.7) PfGW456L13_1406 N.D.
  PfGW456L13_2822 -0.1
  PfGW456L13_4693 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) PfGW456L13_665 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) PfGW456L13_4847 -0.1
DNA polymerase III delta prime subunit (EC 2.7.7.7) PfGW456L13_2111 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) PfGW456L13_1371 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) PfGW456L13_1136 -0.4
  PfGW456L13_3337 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) PfGW456L13_4077 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) PfGW456L13_1187 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN PfGW456L13_5106 -0.1
DNA replication protein DnaC PfGW456L13_2766 N.D.
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) PfGW456L13_5150 -2.6
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) PfGW456L13_5151 +1.7
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) PfGW456L13_5152 -1.2
Helicase PriA essential for oriC/DnaA-independent DNA replication PfGW456L13_286 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA PfGW456L13_1852 -2.0
Holliday junction DNA helicase RuvB PfGW456L13_1853 -2.5
Primosomal protein I PfGW456L13_2765 +0.2
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein PfGW456L13_4668 -0.0
Recombination protein RecR PfGW456L13_4074 -0.8
Replicative DNA helicase (EC 3.6.1.-) PfGW456L13_138 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PfGW456L13_1730 -0.4
Transcription-repair coupling factor PfGW456L13_4027 -1.8

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