SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name L-Tryptophan (C)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) PfGW456L13_4297 +0.2
  PfGW456L13_4603 +0.3
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PfGW456L13_1866 +0.2
  PfGW456L13_902 -1.6
Catalase (EC 1.11.1.6) PfGW456L13_1281 -0.1
  PfGW456L13_2583 -0.1
  PfGW456L13_4215 -0.2
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) PfGW456L13_698 +0.0
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) PfGW456L13_1847 -3.1
  PfGW456L13_2941 -0.5
Glycine cleavage system H protein PfGW456L13_1869 +0.3
  PfGW456L13_2686 +0.7
  PfGW456L13_903 +0.9
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PfGW456L13_1868 +0.1
  PfGW456L13_904 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD No genes
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) PfGW456L13_4295 -0.3
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) PfGW456L13_1139 -1.7
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) PfGW456L13_1216 +0.5
  PfGW456L13_626 -0.4
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) PfGW456L13_1116 -0.4
  PfGW456L13_1451 N.D.
  PfGW456L13_1452 -0.2
  PfGW456L13_2685 -0.2
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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