SEED Subsystem: Oxidative stress in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name L-Tryptophan (C)  
⨯
Alkyl hydroperoxide reductase subunit C-like protein PfGW456L13_1745 +1.5
  PfGW456L13_917 -0.3
Catalase (EC 1.11.1.6) PfGW456L13_1281 -0.1
  PfGW456L13_2583 -0.1
  PfGW456L13_4215 -0.2
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins PfGW456L13_2970 +0.0
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR PfGW456L13_5107 N.D.
Ferroxidase (EC 1.16.3.1) No genes
Fumarate and nitrate reduction regulatory protein PfGW456L13_4071 +0.5
Heme oxygenase HemO, associated with heme uptake PfGW456L13_1883 -0.2
Hydrogen peroxide-inducible genes activator PfGW456L13_407 -0.9
  PfGW456L13_5141 +0.1
  PfGW456L13_773 +0.7
Iron-binding ferritin-like antioxidant protein No genes
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) PfGW456L13_5020 -0.1
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO PfGW456L13_3355 +0.1
Non-specific DNA-binding protein Dps No genes
Organic hydroperoxide resistance protein PfGW456L13_2236 N.D.
  PfGW456L13_3180 +0.1
  PfGW456L13_3181 -0.8
  PfGW456L13_3182 -0.3
  PfGW456L13_3666 N.D.
  PfGW456L13_3774 -0.0
Organic hydroperoxide resistance transcriptional regulator PfGW456L13_2237 -2.0
  PfGW456L13_2255 -0.1
  PfGW456L13_3179 -2.0
Paraquat-inducible protein A PfGW456L13_1544 -0.1
  PfGW456L13_1545 -0.2
  PfGW456L13_3224 -0.2
  PfGW456L13_3225 -0.2
Paraquat-inducible protein B PfGW456L13_1546 -0.1
  PfGW456L13_3226 +0.0
Peroxidase (EC 1.11.1.7) No genes
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR PfGW456L13_2312 -0.1
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) PfGW456L13_1779 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR PfGW456L13_598 -0.1
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family PfGW456L13_481 +0.8
transcriptional regulator, Fur family No genes

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