SEED Subsystem: Peptidoglycan Biosynthesis in Pseudomonas syringae pv. syringae B728a ΔmexB

Experiments:

Role Gene Name KB with Carbenicillin 3.1 ug/ml  
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) Psyr_2313 +0.3
  Psyr_4108 N.D.
D-alanine--D-alanine ligase (EC 6.3.2.4) Psyr_4100 +0.7
D-alanine--D-alanine ligase A (EC 6.3.2.4) No genes
D-alanine--D-alanine ligase B (EC 6.3.2.4) No genes
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) Psyr_2111 -2.6
  Psyr_4361 +0.2
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) Psyr_5119 N.D.
Glutamate racemase (EC 5.1.1.3) Psyr_0952 N.D.
Glutamine synthetase type I (EC 6.3.1.2) Psyr_2273 -0.3
  Psyr_4817 N.D.
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) No genes
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-) No genes
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) Psyr_4357 -0.5
  Psyr_4363 -1.0
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) Psyr_4743 +0.3
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) Psyr_0402 -1.4
  Psyr_0842 -2.1
Murein-DD-endopeptidase (EC 3.4.99.-) Psyr_2414 +0.9
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) Psyr_5119 N.D.
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23) No genes
Penicillin-binding protein 2 (PBP-2) Psyr_4365 N.D.
Penicillin-binding protein 4 precursor No genes
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase No genes
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C Psyr_4387 +0.4
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) Psyr_4105 N.D.
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
Rare lipoprotein A precursor Psyr_4362 N.D.
Rod shape-determining protein RodA Psyr_4364 N.D.
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) Psyr_1637 N.D.
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) Psyr_4135 N.D.
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) Psyr_4102 N.D.
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) Psyr_4101 N.D.
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) Psyr_4104 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) Psyr_4107 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) Psyr_4106 N.D.

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