SEED Subsystem: Entner-Doudoroff Pathway in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50  
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2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) PS417_01605 -3.4
2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type (EC 5.4.2.1) No genes
2-dehydro-3-deoxygluconate aldolase (EC 4.1.2-) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) PS417_12130 -0.2
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
6-phosphogluconolactonase (EC 3.1.1.31) PS417_15140 -0.2
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type PS417_22105 N.D.
Aldehyde dehydrogenase (EC 1.2.1.3) PS417_07290 +0.1
  PS417_11170 +0.5
  PS417_14675 +0.3
  PS417_17430 -0.7
  PS417_24810 -0.4
  PS417_27745 +0.7
D-glycerate 2-kinase (EC 2.7.1.-) PS417_08795 +0.0
Enolase (EC 4.2.1.11) PS417_06310 N.D.
Glucokinase (EC 2.7.1.2) PS417_22685 +0.1
Gluconate dehydratase (EC 4.2.1.39) No genes
Gluconokinase (EC 2.7.1.12) PS417_21985 N.D.
Gluconolactonase (EC 3.1.1.17) PS417_14855 +0.3
  PS417_17365 -0.1
Glucose 1-dehydrogenase (EC 1.1.1.47) PS417_09690 +0.3
  PS417_13985 -0.3
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) PS417_05300 -0.1
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) PS417_12450 +0.2
  PS417_22110 N.D.
Hexokinase (EC 2.7.1.1) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) PS417_22695 -2.2
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NAD) No genes
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial No genes
OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, cyanobacterial No genes
Phosphogluconate dehydratase (EC 4.2.1.12) PS417_22690 -1.8
Phosphoglycerate kinase (EC 2.7.2.3) PS417_26430 N.D.
Phosphoglycerate mutase (EC 5.4.2.1) No genes
Polyphosphate glucokinase (EC 2.7.1.63) No genes
Pyruvate kinase (EC 2.7.1.40) PS417_08790 -0.1
  PS417_22620 -2.7

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