SEED Subsystem: DNA-replication in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50  
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ATP-dependent DNA helicase RecG (EC 3.6.1.-) PS417_27870 -2.7
ATP-dependent DNA helicase RecQ PS417_19950 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA PS417_00005 N.D.
  PS417_20085 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) PS417_22455 N.D.
DNA polymerase I (EC 2.7.7.7) PS417_00405 -1.7
DNA polymerase II (EC 2.7.7.7) PS417_09565 +0.2
DNA polymerase III alpha subunit (EC 2.7.7.7) PS417_06285 N.D.
  PS417_15580 +0.1
  PS417_24520 -0.1
DNA polymerase III beta subunit (EC 2.7.7.7) PS417_00010 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) PS417_05160 +1.9
DNA polymerase III delta prime subunit (EC 2.7.7.7) PS417_21410 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) PS417_24670 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) PS417_12235 N.D.
  PS417_26060 +0.5
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) PS417_20815 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) PS417_25875 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN PS417_24070 -0.8
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) PS417_23770 -2.7
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) PS417_23775 -3.0
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) PS417_23780 N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication PS417_01935 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA PS417_22450 -3.5
Holliday junction DNA helicase RuvB PS417_22445 -2.9
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein PS417_05815 -1.9
Recombination protein RecR PS417_20800 -0.4
Replicative DNA helicase (EC 3.6.1.-) PS417_02585 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PS417_22855 -0.7
Transcription-repair coupling factor PS417_07635 -0.2

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