SEED Subsystem: Protocatechuate branch of beta-ketoadipate pathway in Agrobacterium fabrum C58

Experiments:

Role Gene Name Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct  
⨯
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) Atu4538 -1.2
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) Atu4547 -0.1
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) Atu4548 -0.4
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase No genes
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) Atu0858 +0.1
  Atu4541 -0.3
  Atu5225 N.D.
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) Atu4238 -0.2
  Atu4542 +0.0
  Atu5226 N.D.
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) No genes
Pca regulon regulatory protein PcaR Atu4546 -0.5
PhaK-like protein No genes
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) Atu4539 +0.2
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) Atu4540 +0.3
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) No genes
dicarboxylic acid transporter PcaT No genes

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