SEED Subsystem: Heat shock dnaK gene cluster extended in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Parafilmed volatile agar plate with no fungus  
⨯
Chaperone protein DnaJ PS417_24055 N.D.
Chaperone protein DnaK PS417_24060 N.D.
DNA replication intiation control protein YabA No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX PS417_01540 N.D.
FIG009886: phosphoesterase No genes
Glutathione synthetase (EC 6.3.2.3) PS417_26675 N.D.
Heat shock protein GrpE PS417_24065 N.D.
Heat-inducible transcription repressor HrcA No genes
HspR, transcriptional repressor of DnaK operon No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
MiaB family protein, possibly involved in tRNA or rRNA modification No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) PS417_26755 +0.4
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
RNA polymerase sigma factor RpoH PS417_26795 N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB PS417_26760 -0.0
Ribonuclease PH (EC 2.7.7.56) PS417_27810 +1.6
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) PS417_01830 N.D.
  PS417_26545 +0.2
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) PS417_02960 +0.4
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) PS417_01195 -0.1
Signal peptidase-like protein No genes
Translation elongation factor LepA PS417_05180 N.D.
Xanthosine/inosine triphosphate pyrophosphatase No genes
rRNA small subunit methyltransferase I PS417_04590 +0.7
tmRNA-binding protein SmpB PS417_24095 N.D.

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