SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Parafilmed volatile agar plate with Trichoderma atroviridae IMI  
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COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 PS417_19350 -0.8
  PS417_23495 +0.1
GTP cyclohydrolase I (EC 3.5.4.16) type 2 PS417_28305 +0.5
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) PS417_12990 +0.3
  PS417_18375 -0.0
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) PS417_10635 +0.2
  PS417_27500 +0.1
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily PS417_06865 -0.7
  PS417_07965 +0.1
  PS417_11430 -2.2
  PS417_13665 +0.5
  PS417_14010 -0.0
  PS417_14870 +0.1
  PS417_16825 +1.1
  PS417_19925 N.D.
  PS417_20590 -0.5
  PS417_20680 +0.1
  PS417_20830 +0.4
  PS417_21035 +0.2
  PS417_23410 +0.0
  PS417_24505 -0.0
  PS417_02755 +0.2
Putative preQ0 transporter PS417_22950 -0.9
Queuosine Biosynthesis QueC ATPase PS417_22400 -0.1
Queuosine Biosynthesis QueE Radical SAM PS417_22405 -0.1
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB PS417_26760 -0.5
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) PS417_23250 -0.5
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase PS417_23880 -0.1
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) PS417_23245 N.D.

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