SEED Subsystem: Lysine degradation in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50  
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5-aminopentanamidase (EC 3.5.1.30) PS417_25915 -0.0
5-aminovalerate aminotransferase (EC 2.6.1.48) PS417_00900 +0.5
Beta-lysine acetyltransferase (EC 2.3.1.-) No genes
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) PS417_12515 +0.6
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) No genes
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31) No genes
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) No genes
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) No genes
L-lysine aminomutase regulator No genes
L-lysine permease PS417_28425 +0.2
  PS417_03395 +0.3
  PS417_04535 -0.6
L-pipecolate dehydrogenase (EC 1.5.99.3) PS417_02645 -0.1
L-pipecolate oxidase (1.5.3.7) PS417_02650 +0.3
Lysine 2,3-aminomutase (EC 5.4.3.2) No genes
Lysine 2-monooxygenase (EC 1.13.12.2) PS417_25910 +0.1
Lysine decarboxylase (EC 4.1.1.18) No genes
Lysine decarboxylase 2, constitutive (EC 4.1.1.18) No genes
Lysine decarboxylase, inducible (EC 4.1.1.18) No genes
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) No genes
Lysine/cadaverine antiporter membrane protein CadB No genes
Outer membrane porin, OprD family PS417_01355 -0.2
  PS417_13695 +0.0
  PS417_15430 -0.3
  PS417_15550 -0.1
  PS417_22500 -1.6
  PS417_27185 -2.4
  PS417_03370 +0.0
  PS417_04070 -0.7
Saccharopine dehydrogenase (EC 1.5.1.9) No genes
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) No genes
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10) No genes
Transcriptional activator of cad operon No genes

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