SEED Subsystem: Heme and Siroheme Biosynthesis in Agrobacterium fabrum C58

Experiments:

Role Gene Name AgroPhage_C10  
5-aminolevulinate synthase (EC 2.3.1.37) Atu2613 N.D.
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) Atu2247 N.D.
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Atu1601 +2.1
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative No genes
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2 No genes
Distant homolog of E. coli HemX protein in Xanthomonadaceae No genes
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Atu3771 N.D.
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) Atu3677 +0.4
  Atu4802 +0.2
  Atu5124 -0.2
Glutamyl-tRNA reductase (EC 1.2.1.70) No genes
Glutamyl-tRNA synthetase (EC 6.1.1.17) No genes
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase No genes
Hemoprotein HemQ, essential component of heme biosynthetic pathway in Gram-positive bacteria No genes
Hypothetical membrane protein, possible involvement in cytochrome functioning/assembly No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent No genes
Porphobilinogen deaminase (EC 2.5.1.61) Atu2652 N.D.
Porphobilinogen synthase (EC 4.2.1.24) Atu1161 N.D.
Precorrin-2 oxidase (EC 1.3.1.76) Atu1454 -0.0
  Atu3899 -0.2
Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4) No genes
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) No genes
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB Atu0325 N.D.
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake No genes
Sirohydrochlorin ferrochelatase (EC 4.99.1.4) Atu1454 -0.0
  Atu3899 -0.2
Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Atu2835 N.D.
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Atu1454 -0.0
  Atu2794 +0.9
  Atu3899 -0.2
Uroporphyrinogen-III synthase (EC 4.2.1.75) Atu2653 N.D.
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75) No genes
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75) No genes

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