SEED Subsystem: DNA Repair Base Excision in Pseudomonas putida KT2440

Experiments:

Role Gene Name 3-methyl-1-butanol (C)  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC PP_1105 -0.0
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PP_3260 +0.0
DNA ligase (EC 6.5.1.2) PP_4274 N.D.
  PP_4968 +0.2
DNA polymerase I (EC 2.7.7.7) PP_0123 -3.4
DNA polymerase II (EC 2.7.7.7) PP_2393 -0.2
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PP_0062 -0.0
  PP_1642 N.D.
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PP_0705 +0.1
  PP_4812 -0.1
Endonuclease III (EC 4.2.99.18) PP_1092 -1.4
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PP_1365 N.D.
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PP_5125 +0.0
Ku domain protein PP_3255 -0.1
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PP_1477 -0.0
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PP_1413 +0.0

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