SEED Subsystem: D-ribose utilization in Agrobacterium fabrum C58

Experiments:

Role Gene Name Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days  
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Predicted nucleoside ABC transporter, ATP-binding component Atu0127 +0.3
Predicted nucleoside ABC transporter, permease 1 component Atu0128 +0.4
Predicted nucleoside ABC transporter, permease 2 component Atu0129 +0.5
Predicted nucleoside ABC transporter, substrate-binding component Atu0126 +0.7
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) Atu0364 +0.0
  Atu2509 +0.1
  Atu3068 -0.0
  Atu4649 -0.1
  Atu4847 -0.1
Ribose 5-phosphate isomerase A (EC 5.3.1.6) Atu1613 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) Atu1898 -0.0
  Atu3536 -0.1
  Atu3818 +0.3
  Atu3880 +0.1
  Atu4032 +1.0
  Atu4321 -0.2
  Atu4370 +0.0
  Atu4745 -0.0
  Atu4843 -0.0
  Atu6069 +0.0
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) Atu1899 -0.1
  Atu3372 -0.0
  Atu4320 +0.2
  Atu4842 +0.3
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) Atu1397 -0.7
  Atu1402 -0.3
  Atu1900 -0.3
  Atu2090 +0.2
  Atu2818 +0.9
  Atu3065 +0.1
  Atu3238 +0.1
  Atu3370 +0.2
  Atu3534 -0.2
  Atu3535 -0.0
  Atu3819 -0.1
  Atu3879 +0.2
  Atu3968 +0.0
  Atu3969 +0.1
  Atu4030 +1.1
  Atu4031 +1.2
  Atu4244 +0.1
  Atu4322 -0.2
  Atu4359 -0.1
  Atu4371 -0.3
  Atu4372 -0.6
  Atu4679 -0.1
  Atu4746 -0.1
  Atu4844 +0.2
  Atu4845 +0.3
  Atu5481 -0.0
  Atu6068 -0.1
Ribose operon repressor Atu3162 +0.2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 Atu4747 +0.4
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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