SEED Subsystem: Glycine and Serine Utilization in Pseudomonas putida KT2440

Experiments:

Role Gene Name Hydroxy-L-Proline (C)  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PP_0986 -1.1
  PP_5194 -0.0
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) PP_4594 -0.0
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) PP_0762 -0.1
  PP_2533 -0.1
  PP_3225 +0.1
  PP_4316 +0.0
  PP_4589 -0.2
  PP_5155 -4.6
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator PP_0698 -0.1
  PP_2176 +0.0
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter PP_1059 -0.2
  PP_4840 -0.3
Glycerate kinase (EC 2.7.1.31) PP_1212 N.D.
  PP_2381 N.D.
  PP_3134 -0.2
  PP_3178 -0.1
  PP_3962 +0.0
Glycine cleavage system H protein PP_0989 -0.8
  PP_5193 +0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PP_0988 -1.3
  PP_5192 +0.0
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) PP_3144 +0.1
L-serine dehydratase, beta subunit (EC 4.3.1.17) PP_3144 +0.1
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) PP_1768 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) PP_1721 -0.0
  PP_4909 -6.2
  PP_5130 +0.0
  PP_5147 -0.0
Serine hydroxymethyltransferase (EC 2.1.2.1) PP_0322 -0.1
  PP_0671 N.D.
  PP_0672 -0.1
Serine transporter PP_3589 -0.1
Seryl-tRNA synthetase (EC 6.1.1.11) PP_4000 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) PP_3191 -0.1
  PP_4430 +0.0

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