SEED Subsystem: Protocatechuate branch of beta-ketoadipate pathway in Pseudomonas putida KT2440

Experiments:

Role Gene Name Vanillic Acid (C)  
⨯
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) PP_1379 -6.0
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) PP_3951 -5.2
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) PP_3952 -6.4
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase No genes
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) PP_1381 -3.0
  PP_3648 -0.2
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) PP_1380 -4.9
  PP_3645 -0.2
  PP_4540 +0.1
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) PP_1377 -5.6
Pca regulon regulatory protein PcaR PP_1375 -5.1
PhaK-like protein PP_1173 +0.1
  PP_1383 +0.5
  PP_2517 +0.0
  PP_3739 +1.4
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) PP_4655 -4.0
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) PP_4656 -3.9
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) PP_3122 +0.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) PP_3123 +0.2
dicarboxylic acid transporter PcaT PP_1378 -1.6

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