SEED Subsystem: Deoxyribose and Deoxynucleoside Catabolism in Agrobacterium fabrum C58

Experiments:

Role Gene Name Uridine 5-monophosphate (C)  
⨯
Deoxyribonucleoside regulator DeoR (transcriptional repressor) No genes
Deoxyribose operon repressor, DeoR family Atu4841 +0.2
Deoxyribose-phosphate aldolase (EC 4.1.2.4) Atu0132 -0.0
  Atu4848 +0.0
Nucleoside permease NupC No genes
Phosphopentomutase (EC 5.4.2.7) Atu0137 +0.1
Predicted nucleoside ABC transporter, ATP-binding component Atu0127 -1.3
Predicted nucleoside ABC transporter, permease 1 component Atu0128 -1.3
Predicted nucleoside ABC transporter, permease 2 component Atu0129 -1.4
Predicted nucleoside ABC transporter, substrate-binding component Atu0126 -1.5
Purine nucleoside phosphorylase (EC 2.4.2.1) Atu0131 -0.3
  Atu0645 N.D.
Putative deoxyribonuclease YjjV No genes
Putative deoxyribose-specific ABC transporter, ATP-binding protein No genes
Putative deoxyribose-specific ABC transporter, permease protein No genes
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) No genes
Ribokinase (EC 2.7.1.15) Atu0364 -0.7
  Atu2509 -0.0
  Atu3068 +0.2
  Atu4649 +0.1
  Atu4847 -0.1
Thymidine phosphorylase (EC 2.4.2.4) Atu0133 -0.1

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