SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas putida KT2440

Experiments:

Role Gene Name L-Lysine (C)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) PP_4299 N.D.
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PP_0986 +0.3
  PP_5194 +0.1
Catalase (EC 1.11.1.6) PP_0115 +0.2
  PP_0481 +0.1
  PP_2887 +0.1
  PP_3668 +0.0
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) PP_5366 -0.2
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) PP_1212 N.D.
  PP_2381 N.D.
  PP_3134 -0.1
  PP_3178 +0.0
  PP_3962 -0.1
Glycine cleavage system H protein PP_0989 -0.0
  PP_5193 +0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PP_0988 +0.1
  PP_5192 +0.0
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE PP_3746 -0.1
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF PP_3747 +0.3
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD PP_3745 +0.2
  PP_4493 -4.9
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) PP_4297 +0.1
Hydroxypyruvate reductase (EC 1.1.1.81) PP_1707 +0.4
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) PP_0356 -2.9
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) PP_0094 -0.5
  PP_0416 +0.3
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) PP_0322 +0.6
  PP_0671 N.D.
  PP_0672 -0.0
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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