MetaCyc Pathway: L-asparagine biosynthesis III (tRNA-dependent) in Variovorax sp. SCN45

Add experiment(s):


Glutamate synthase (NADPH):
L-glutamine + H2O→ammonia + L-glutamate + H+
(EC 1.4.1.13; 1.4.1.14; 1.4.7.1; 2.6.1.85; 3.5.1.2; 3.5.1.38; 4.1.3.27; 4.3.2.10; 4.3.3.6; 6.3.4.2; 6.3.5.13; 6.3.5.2; 6.3.5.4; 6.3.5.5; 6.3.5.6; 6.3.5.7)
GFF1457
GFF1473
GFF1880
GFF194
GFF1977
GFF206
GFF2338
GFF2417
GFF2419
GFF2453
GFF2751
GFF3469
GFF3490
GFF376
GFF377
GFF394
GFF4130
GFF5061
GFF5062
GFF5063
GFF5332
GFF5333
GFF5374
GFF5894
GFF5896
GFF5959
GFF6278
GFF6781
GFF6827
GFF7707
GFF7814
GFF7905
Aspartate--tRNA(Asn) ligase:
L-aspartate + tRNAAsn + ATP→an L-aspartyl-[tRNAAsn] + AMP + diphosphate
(EC 6.1.1.23)
GFF2549
Asparaginyl-tRNA synthase (glutamine-hydrolyzing):
an L-aspartyl-[tRNAAsn] + ATP→a 4-phosphooxy-L-aspartyl-[tRNAAsn] + ADP
(EC 6.3.5.6)
GFF1473
GFF2338
GFF2417
GFF2419
GFF3490
GFF394
GFF4130
GFF5061
GFF5062
GFF5063
GFF5959
Asparaginyl-tRNA synthase (glutamine-hydrolyzing):
a 4-phosphooxy-L-aspartyl-[tRNAAsn] + ammonia→an L-asparaginyl-[tRNAAsn] + phosphate
(EC 6.3.5.6)
GFF1473
GFF2338
GFF2417
GFF2419
GFF3490
GFF394
GFF4130
GFF5061
GFF5062
GFF5063
GFF5959

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information