MetaCyc Pathway: superpathway of fatty acid biosynthesis I (E. coli) in Variovorax sp. SCN45

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[Acyl-carrier-protein] S-acetyltransferase:
acetyl-CoA + a soluble [acyl-carrier protein]→an acetyl-[acp] + coenzyme A
(EC 2.3.1.38)
No genes
acetyl-CoA + a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine→malonyl-CoA + a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine (EC 2.1.3.15)
GFF3881
GFF548
GFF5548
[Acyl-carrier-protein] S-malonyltransferase:
malonyl-CoA + a soluble [acyl-carrier protein]→a malonyl-[acp] + coenzyme A
(EC 2.3.1.39)
GFF1637
GFF1640
GFF3858
GFF52
GFF7451
GFF7509
GFF7578
GFF7901
Beta-ketoacyl-acyl-carrier-protein synthase III:
acetyl-CoA + a malonyl-[acp] + H+→an acetoacetyl-[acp] + CO2 + coenzyme A
(EC 2.3.1.180)
GFF1132
GFF2675
GFF3857
Beta-ketoacyl-acyl-carrier-protein synthase II:
an acetyl-[acp] + a malonyl-[acp] + H+→an acetoacetyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179; 2.3.1.41)
GFF2669
GFF2782
GFF3320
GFF3861
GFF5072
GFF5927
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxoacyl-[acyl-carrier protein] + NADPH + H+→a (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+
(EC 1.1.1.100)
GFF1040
GFF1065
GFF1348
GFF1568
GFF1573
GFF2104
GFF2166
GFF2281
GFF2420
GFF2421
GFF2643
GFF2697
GFF2922
GFF2967
GFF3062
GFF308
GFF3448
GFF3859
GFF3976
GFF3986
GFF4204
GFF4278
GFF4286
GFF4298
GFF4314
GFF4319
GFF4357
GFF4358
GFF4616
GFF4866
GFF4965
GFF4969
GFF4970
GFF4976
GFF5584
GFF6068
GFF6541
GFF6804
GFF6902
GFF7056
GFF7089
GFF7388
GFF84
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyacyl-[acyl-carrier protein]→a trans-2-enoyl-[acyl-carrier protein] + H2O
(EC 4.2.1.59)
GFF382
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
GFF382
Trans-2-decenoyl-[acyl-carrier-protein] isomerase:
a (2E)-dec-2-enoyl-[acp]→a (3Z)-dec-3-enoyl-[acp]
(EC 5.3.3.14)
No genes
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a trans-2-enoyl-[acyl-carrier protein] + NADH + H+→a 2,3,4-saturated fatty acyl-[acp] + NAD+
(EC 1.3.1.9)
GFF1657
GFF230
GFF4579
GFF6484
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a trans-2-enoyl-[acyl-carrier protein] + NADPH + H+→a 2,3,4-saturated fatty acyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
GFF230
GFF4579
Beta-ketoacyl-acyl-carrier-protein synthase II:
a 2,3,4-saturated fatty acyl-[acp] + a malonyl-[acp] + H+→a 3-oxoacyl-[acyl-carrier protein] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179; 2.3.1.41)
GFF2669
GFF2782
GFF3320
GFF3861
GFF5072
GFF5927
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (3Z)-dec-3-enoyl-[acp] + a malonyl-[acp] + H+→a (5Z)-3-oxododec-5-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179; 2.3.1.41)
GFF2669
GFF2782
GFF3320
GFF3861
GFF5072
GFF5927
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (5Z)-3-oxododec-5-enoyl-[acp] + NADPH + H+→a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp] + NADP+
(EC 1.1.1.100)
GFF1040
GFF1065
GFF1348
GFF1568
GFF1573
GFF2104
GFF2166
GFF2281
GFF2420
GFF2421
GFF2643
GFF2697
GFF2922
GFF2967
GFF3062
GFF308
GFF3448
GFF3859
GFF3976
GFF3986
GFF4204
GFF4278
GFF4286
GFF4298
GFF4314
GFF4319
GFF4357
GFF4358
GFF4616
GFF4866
GFF4965
GFF4969
GFF4970
GFF4976
GFF5584
GFF6068
GFF6541
GFF6804
GFF6902
GFF7056
GFF7089
GFF7388
GFF84
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp]→a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + H2O
(EC 4.2.1.59)
GFF382
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + NADH + H+→a (5Z)-dodec-5-enoyl-[acp] + NAD+
(EC 1.3.1.9)
GFF1657
GFF230
GFF4579
GFF6484

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information