MetaCyc Pathway: superpathway of plastoquinol biosynthesis in Variovorax sp. SCN45

Add experiment(s):


geranyl diphosphate + 7 3-methylbut-3-en-1-yl diphosphate→all-trans-nonaprenyl diphosphate + 7 diphosphate (EC 2.5.1.84)
No genes
Aspartate transaminase:
L-tyrosine + 2-oxoglutarate→3-(4-hydroxyphenyl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)
GFF1574
GFF1934
GFF2336
GFF2409
GFF245
GFF2454
GFF2803
GFF3057
GFF3375
GFF3955
GFF4109
GFF4125
GFF417
GFF4743
GFF5025
GFF5154
GFF5348
GFF573
GFF5904
GFF621
GFF6304
GFF6644
GFF6886
GFF7014
GFF7134
GFF7679
GFF7682
GFF7897
GFF844
GFF944
4-hydroxyphenylpyruvate dioxygenase:
3-(4-hydroxyphenyl)pyruvate + dioxygen→homogentisate + CO2 (EC 1.13.11.27)
GFF1962
GFF2594
GFF6502
all-trans-nonaprenyl diphosphate + homogentisate + H+→2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + CO2 + diphosphate (EC 2.5.1.117)
No genes
2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + S-adenosyl-L-methionine→plastoquinol-9 + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.295)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information