MetaCyc Pathway: indole-3-acetate biosynthesis II in Variovorax sp. SCN45

Add experiment(s):


L-tryptophan + H+→tryptamine + CO2 (EC 4.1.1.105; 4.1.1.28)
No genes
L-tryptophan + dioxygen + a reduced [NADPH-hemoprotein reductase]→N2-hydroxy-L-tryptophan + an oxidized [NADPH-hemoprotein reductase] + H+ + H2O (EC 1.14.14.156)
No genes
Aspartate transaminase:
L-tryptophan + 2-oxoglutarate→(indol-3-yl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27)
GFF1574
GFF1934
GFF2336
GFF2409
GFF245
GFF2454
GFF2803
GFF3057
GFF3375
GFF4109
GFF4125
GFF4743
GFF5025
GFF5154
GFF573
GFF5904
GFF621
GFF6644
GFF6886
GFF7014
GFF7134
GFF7679
GFF7682
GFF7897
GFF844
N2-hydroxy-L-tryptophan + dioxygen + a reduced [NADPH-hemoprotein reductase]→N2,N2-dihydroxy-L-tryptophan + an oxidized [NADPH-hemoprotein reductase] + H2O (EC 1.14.14.156)
No genes
tryptamine + NADPH + dioxygen→N-hydroxyl-tryptamine + NADP+ + H2O
No genes
(indol-3-yl)pyruvate + NADPH + dioxygen + H+→(indol-3-yl)acetate + CO2 + NADP+ + H2O (EC 1.14.13.168)
No genes
N-hydroxyl-tryptamine + an oxidized electron carrier→(E)-(indol-3-yl)acetaldehyde oxime + a reduced two electron carrier
No genes
N2,N2-dihydroxy-L-tryptophan + H+→(E)-(indol-3-yl)acetaldehyde oxime + CO2 + H2O (spontaneous) (EC 1.14.14.156)
No genes
(E)-(indol-3-yl)acetaldehyde oxime→(indol-3-yl)acetonitrile + H2O (EC 4.8.1.3)
No genes
Nitrilase:
(indol-3-yl)acetonitrile + 2 H2O→(indol-3-yl)acetate + ammonium (EC 3.5.5.1)
GFF457
GFF5445
Nitrile hydratase (in reverse):
(indol-3-yl)acetonitrile + H2O→(indol-3-yl)acetamide (EC 4.2.1.84)
GFF3002
GFF3003
Amidase:
(indol-3-yl)acetamide + H2O→(indol-3-yl)acetate + ammonium (EC 3.5.1.4)
GFF1996
GFF2338
GFF3459
GFF4596
GFF6192

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information