MetaCyc Pathway: L-arginine degradation V (arginine deiminase pathway) in Pseudomonas syringae pv. syringae B728a ΔmexB

Arginine deiminase:
L-arginine + H₂O→L-citrulline + ammonium (EC 3.5.3.6)

Ornithine carbamoyltransferase (in reverse):
L-citrulline + H⁺ + phosphate→carbamoyl phosphate + L-ornithine (EC 2.1.3.3)

Psyr_2685

Psyr_3901

Carbamate kinase (in reverse):
carbamoyl phosphate + ADP→carbamate + ATP (EC 2.7.2.2; 6.3.4.16; 6.3.5.5)

Psyr_2686

Psyr_4191

Psyr_4192

carbamate + 2 H⁺→CO₂ + ammonium (spontaneous) (EC 3.5.1.110; 3.5.1.20; 3.5.1.54; 4.2.1.104)

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Pathway details at MetaCyc
Fitness data for 12 genes
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All MetaCyc pathways for Pseudomonas syringae pv. syringae B728a ΔmexB

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information