MetaCyc Pathway: anteiso-branched-chain fatty acid biosynthesis in Paraburkholderia sabiae LMG 24235

Add experiment(s):


Branched-chain-amino-acid transaminase:
L-isoleucine + 2-oxoglutarate→(3S)-3-methyl-2-oxopentanoate + L-glutamate
(EC 2.6.1.42)
QEN71_RS02410
2-oxoisovalerate dehydrogenase (acylating):
(3S)-3-methyl-2-oxopentanoate + coenzyme A + NAD+→(2S)-2-methylbutanoyl-CoA + CO2 + NADH
(EC 1.2.1.25)
No genes
(2S)-2-methylbutanoyl-CoA + a malonyl-[acp] + H+→a (4S)-4-methyl-3-oxohhexanoyl-[acp] + CO2 + coenzyme A (EC 2.3.1.300)
No genes
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (4S)-4-methyl-3-oxohhexanoyl-[acp] + NADPH + H+→a (4S,3R)-3-hydroxy-4-methylhexanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (4S,3R)-3-hydroxy-4-methylhexanoyl-[acp]→a (2E,4S)-4-methylhex-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,4S)-4-methylhex-2-enoyl-[acp] + NADH + H+→a (4S)-4-methylhexanoyl-[acp] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,4S)-4-methylhex-2-enoyl-[acp] + NADPH + H+→a (4S)-4-methylhexanoyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
QEN71_RS10120
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (4S)-4-methylhexanoyl-[acp] + a malonyl-[acp] + H+→a (6S)-6-methyl-3-oxooctanoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179)
QEN71_RS03870
QEN71_RS04565
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (6S)-6-methyl-3-oxooctanoyl-[acp] + NADPH + H+→a (3R,6S)-3-hydroxy-6-methyloctanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,6S)-3-hydroxy-6-methyloctanoyl-[acp]→a (2E,6S)-6-methyloct-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,6S)-6-methyloct-2-enoyl-[acp] + NADH + H+→a (6S)-6-methyloctanoyl-[acp] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,6S)-6-methyloct-2-enoyl-[acp] + NADPH + H+→a (6S)-6-methyloctanoyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104)
QEN71_RS10120
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (6S)-6-methyloctanoyl-[acp] + a malonyl-[acp] + H+→an (8S)-8-methyl-3-oxodecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179)
QEN71_RS03870
QEN71_RS04565
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
an (8S)-8-methyl-3-oxodecanoyl-[acp] + NADPH + H+→a (3R,8S)-3-hydroxy-8-methyldecanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,8S)-3-hydroxy-8-methyldecanoyl-[acp]→a (2E,8S)-8-methyldec-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,8S)-8-methyldec-2-enoyl-[acp] + NADH + H+→an (8S)-8-methyldecanoyl-[acyl-carrier protein] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,8S)-8-methyldec-2-enoyl-[acp] + NADPH + H+→an (8S)-8-methyldecanoyl-[acyl-carrier protein] + NADP+
(EC 1.3.1.10; 1.3.1.104)
QEN71_RS10120
Beta-ketoacyl-acyl-carrier-protein synthase II:
an (8S)-8-methyldecanoyl-[acyl-carrier protein] + a malonyl-[acp] + H+→a (10S)-10-methyl-3-oxododecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179)
QEN71_RS03870
QEN71_RS04565
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (10S)-10-methyl-3-oxododecanoyl-[acp] + NADPH + H+→a (3R,10S)-3-hydroxy-10-methyldodecanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,10S)-3-hydroxy-10-methyldodecanoyl-[acp]→a (2E,10S)-10-methyldodec-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,10S)-10-methyldodec-2-enoyl-[acp] + NADH + H+→a (10S)-10-methyldodecanoyl-[acp] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,10S)-10-methyldodec-2-enoyl-[acp] + NADPH + H+→a (10S)-10-methyldodecanoyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104)
QEN71_RS10120
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (10S)-10-methyldodecanoyl-[acp] + a malonyl-[acp] + H+→a (12S)-12-methyl-3-oxotetradecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179)
QEN71_RS03870
QEN71_RS04565
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (12S)-12-methyl-3-oxotetradecanoyl-[acp] + NADPH + H+→a (3R,12S)-3-hydroxy-12-methyltetradecanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,12S)-3-hydroxy-12-methyltetradecanoyl-[acp]→a (2E,12S)-12-methyltetradec-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,12S)-12-methyltetradec-2-enoyl-[acp] + NADH + H+→a (12S)-12-methyltetradecanoyl-[acp] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,12S)-12-methyltetradec-2-enoyl-[acp] + NADPH + H+→a (12S)-12-methyltetradecanoyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
QEN71_RS10120
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (12S)-12-methyltetradecanoyl-[acp] + a malonyl-[acp] + H+→a (14S)-14-methyl-3-oxohexadecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2
(EC 2.3.1.179)
QEN71_RS03870
QEN71_RS04565
Oleoyl-[acyl-carrier-protein] hydrolase:
a (12S)-12-methyltetradecanoyl-[acp] + H2O→(12S)-12-methyltetradecanoate + a soluble [acyl-carrier protein] + H+
(EC 3.1.2.14)
No genes
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (14S)-14-methyl-3-oxohexadecanoyl-[acp] + NADPH + H+→a (3R,14S)-3-hydroxy-14-methylhexadecanoyl-[acp] + NADP+
(EC 1.1.1.100)
QEN71_RS01840
QEN71_RS02665
QEN71_RS02810
QEN71_RS03865
QEN71_RS04555
QEN71_RS07495
QEN71_RS08210
QEN71_RS08280
QEN71_RS10120
QEN71_RS11605
QEN71_RS12650
QEN71_RS12790
QEN71_RS13180
QEN71_RS15615
QEN71_RS15890
QEN71_RS15970
QEN71_RS16910
QEN71_RS16930
QEN71_RS18940
QEN71_RS19320
QEN71_RS19875
QEN71_RS22470
QEN71_RS22960
QEN71_RS24385
QEN71_RS24930
QEN71_RS25895
QEN71_RS27100
QEN71_RS29765
QEN71_RS30005
QEN71_RS30200
QEN71_RS30445
QEN71_RS31020
QEN71_RS31395
QEN71_RS32355
QEN71_RS32915
QEN71_RS33390
QEN71_RS33420
QEN71_RS33735
QEN71_RS33860
QEN71_RS34325
QEN71_RS34445
QEN71_RS35630
QEN71_RS36135
QEN71_RS36540
QEN71_RS36910
QEN71_RS37725
QEN71_RS38560
QEN71_RS38920
QEN71_RS39090
QEN71_RS39175
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,14S)-3-hydroxy-14-methylhexadecanoyl-[acp]→a (2E,14S)-14-methylhexadec-2-enoyl-[acp] + H2O
(EC 4.2.1.59)
QEN71_RS06475
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,14S)-14-methylhexadec-2-enoyl-[acp] + NADH + H+→a (14S)-14-methylhexadecanoyl-[acp] + NAD+
(EC 1.3.1.9)
QEN71_RS06165
QEN71_RS13540
QEN71_RS30430
QEN71_RS30525
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E,14S)-14-methylhexadec-2-enoyl-[acp] + NADPH + H+→a (14S)-14-methylhexadecanoyl-[acp] + NADP+
(EC 1.3.1.10; 1.3.1.104)
QEN71_RS10120
Oleoyl-[acyl-carrier-protein] hydrolase:
a (14S)-14-methylhexadecanoyl-[acp] + H2O→(14S)-14-methylhexadecanoate + a soluble [acyl-carrier protein] + H+
(EC 3.1.2.14)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information