MetaCyc Pathway: photorespiration I in Paraburkholderia sabiae LMG 24235

Add experiment(s):


D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
QEN71_RS04040
QEN71_RS04505
QEN71_RS27545
QEN71_RS34125
(S)-2-hydroxy-acid oxidase:
glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)
QEN71_RS17020
QEN71_RS26580
QEN71_RS38015
QEN71_RS40185
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
QEN71_RS17005
QEN71_RS34005
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
QEN71_RS29205
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
QEN71_RS12155
QEN71_RS12185
QEN71_RS34000
Glycerate kinase:
D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
QEN71_RS12190
QEN71_RS21995
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
QEN71_RS08310
QEN71_RS11055
QEN71_RS26235
QEN71_RS33600
QEN71_RS34010
QEN71_RS34315
QEN71_RS35520

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information