MetaCyc Pathway: malate/L-aspartate shuttle pathway in Pantoea agglomerans CFBP13505 P0401

Add experiment(s):


Aspartate transaminase:
L-aspartate + 2-oxoglutarate→oxaloacetate + L-glutamate (EC 2.6.1.1)
PagCFBP13516_RS00080
PagCFBP13516_RS01090
PagCFBP13516_RS01115 (pdxR)
PagCFBP13516_RS03520
PagCFBP13516_RS03525
PagCFBP13516_RS06375 (pdxR)
PagCFBP13516_RS06560
PagCFBP13516_RS09780
PagCFBP13516_RS12850
PagCFBP13516_RS14200
PagCFBP13516_RS18340
PagCFBP13516_RS23715
Malate dehydrogenase (in reverse):
oxaloacetate + NADH + H+→(S)-malate + NAD+ (EC 1.1.1.37; 1.1.1.38)
PagCFBP13516_RS02535 (mdh)
PagCFBP13516_RS07125

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information