MetaCyc Pathway: photorespiration I in Escherichia coli BW25113

Add experiment(s):


D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
b0383 (phoA)
b3385 (gph)
(S)-2-hydroxy-acid oxidase:
glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)
b1687 (ydiJ)
b2660 (ygaF)
b2979 (glcD)
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
b0116 (lpd)
b2905 (gcvT)
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
No genes
Glycerate kinase:
D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
b0514 (glxK)
b3124 (garK)
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
b2551 (glyA)

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information