MetaCyc Pathway: allantoin degradation IV (anaerobic) in Escherichia coli ECRC98

Add experiment(s):


(S)-(+)-allantoin[out] + H+[out]→(S)-(+)-allantoin[in] + H+[in]
JDDGAC_11555 (ybbW)
Allantoinase:
(S)-(+)-allantoin + H2O→allantoate + H+ (EC 3.5.2.5)
JDDGAC_11545 (allB)
JDDGAC_11550 (allB)
Allantoate deiminase:
allantoate + 2 H+ + H2O→(S)-ureidoglycine + ammonium + CO2 (EC 3.5.3.9)
JDDGAC_11520 (allC)
(S)-ureidoglycine + H2O→(S)-ureidoglycolate + ammonium (EC 3.5.3.26)
JDDGAC_11520 (allC)
JDDGAC_11525 (allE)
Ureidoglycolate dehydrogenase:
(S)-ureidoglycolate + NAD(P)+→N-carbamoyl-2-oxoglycine + NAD(P)H + H+ (EC 1.1.1.154)
JDDGAC_11515 (allD)
(S)-ureidoglycolate + NAD+→N-carbamoyl-2-oxoglycine + NADH + H+ (EC 1.1.1.350)
JDDGAC_11515 (allD)
Oxamate carbamoyltransferase (in reverse):
N-carbamoyl-2-oxoglycine + phosphate→carbamoyl phosphate + oxamate (EC 2.1.3.5)
No genes
Carbamate kinase (in reverse):
carbamoyl phosphate + ADP→carbamate + ATP (EC 2.7.2.2; 6.3.4.16; 6.3.5.5)
JDDGAC_11495 (arcC)
JDDGAC_12615 (yahI)
JDDGAC_14535 (carB)
JDDGAC_14540 (carA)
JDDGAC_23315 (arcC)
carbamate + 2 H+→CO2 + ammonium (spontaneous) (EC 3.5.1.110; 3.5.1.20; 3.5.1.54; 4.2.1.104)
JDDGAC_10655 (pxpC)
JDDGAC_10660 (pxpB)
JDDGAC_12485 (cynS)

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information