MetaCyc Pathway: pectin degradation I in Dickeya dadantii 3937

Pectinesterase:
a methyl-esterified homogalacturonan + n H₂O→a homogalacturonan + n methanol + n H⁺ (EC 3.1.1.11)

Exo-poly-alpha-galacturonosidase:
a homogalacturonan + H₂O→a homogalacturonan + α-D-galacturonosyl-(1→4)-α-D-galacturonate (EC 3.2.1.82)

DDA3937_RS20090

DDA3937_RS20095

DDA3937_RS20100

α-D-galacturonosyl-(1→4)-α-D-galacturonate→4-deoxy-L-threo-hex-4-enopyranuronate + D-galactopyranuronate

DDA3937_RS11450

Links:

Pathway details at MetaCyc
Fitness data for 6 genes
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All MetaCyc pathways for Dickeya dadantii 3937

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information