MetaCyc Pathway: superpathway of pyrimidine ribonucleosides salvage in Dickeya dadantii 3937

Add experiment(s):


Cytidine deaminase:
cytidine + H+ + H2O→uridine + ammonium (EC 3.5.4.5)
DDA3937_RS08485
cytidine + ATP→CMP + ADP + H+ (EC 2.7.1.213; 2.7.1.48)
DDA3937_RS06690
Cytidylate kinase:
CMP + ATP→CDP + ADP (EC 2.7.4.14; 2.7.4.25)
DDA3937_RS09680
Uridine nucleosidase:
uridine + H2O→uracil + D-ribofuranose (EC 3.2.2.3)
DDA3937_RS18320
Uridine kinase:
uridine + ATP→UMP + ADP + H+ (EC 2.7.1.48)
DDA3937_RS06690
Nucleoside-diphosphate kinase:
CDP + ATP→CTP + ADP (EC 2.7.4.6)
DDA3937_RS05800
DDA3937_RS15485
Uracil phosphoribosyltransferase (in reverse):
uracil + 5-phospho-α-D-ribose 1-diphosphate→UMP + diphosphate (EC 2.4.2.9)
DDA3937_RS06030
Cytidylate kinase:
UMP + ATP→UDP + ADP (EC 2.7.4.14; 2.7.4.22)
DDA3937_RS05125
DDA3937_RS09680
Nucleoside-diphosphate kinase:
UDP + ATP→UTP + ADP (EC 2.7.4.6)
DDA3937_RS05800
DDA3937_RS15485
CTP synthase:
UTP + ATP + L-glutamine + H2O→CTP + ADP + L-glutamate + 2 H+ + phosphate (EC 6.3.4.2)
DDA3937_RS01275
DDA3937_RS17005

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information