MetaCyc Pathway: mammalian high-mannose <i>N</i>-glycan degradation in Phocaeicola dorei CL03T12C01

MetaCyc Pathway: mammalian high-mannose N-glycan degradation in Phocaeicola dorei CL03T12C01

Man₉GlcNAc₂-[protein] (isomer 9A_1,2,3B_1,2,3) + H₂O→Man₉GlcNAc_{[extracellular} + a β-D-GlcNAc-N-Asn-[protein]

No genes

Man₉GlcNAc_{[extracellular}_[out]→Man₉GlcNAc_[periplasm]_[in]

No genes

Man₉GlcNAc_[periplasm] + 4 H₂O→Man₅GlcNAc + 4 D-mannopyranose

No genes

Man₅GlcNAc + 2 H₂O→Man₃GlcNAc + 2 β-D-mannopyranose

ABI39_RS03315

Man₃GlcNAc + H₂O→D-mannopyranose + Man₂GlcNAc

ABI39_RS03330

Links:

Pathway details at MetaCyc
Fitness data for 2 genes
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All MetaCyc pathways for Phocaeicola dorei CL03T12C01

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information