MetaCyc Pathway: heparan sulfate degradation in Phocaeicola dorei CL03T12C01

Add experiment(s):


Heparin-sulfate lyase:
heparan sulfate→n 4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine (EC 4.2.2.8)
No genes
Glucuronosyl-disulfoglucosamine glucuronidase:
4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine + H2O→4-deoxy-L-threo-hex-4-enopyranuronate + N-sulfo-D-glucosamine (EC 3.2.1.56)
ABI39_RS08960
ABI39_RS08995
N-sulfoglucosamine sulfohydrolase:
N-sulfo-D-glucosamine + H2O→D-glucosamine + sulfate (EC 3.10.1.1)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information