MetaCyc Pathway: tRNA charging in Agrobacterium fabrum C58

Add experiment(s):


Alanine--tRNA ligase:
a tRNAAla + L-alanine + ATP→an L-alanyl-[tRNAAla] + AMP + diphosphate (EC 6.1.1.7)
Atu1873
Arginine--tRNA ligase:
L-arginine + a tRNAArg + ATP→an L-arginyl-[tRNAArg] + AMP + diphosphate (EC 6.1.1.19)
Atu1711
Asparagine--tRNA ligase:
L-asparagine + tRNAAsn + ATP→an L-asparaginyl-[tRNAAsn] + AMP + diphosphate (EC 6.1.1.22)
No genes
Aspartate--tRNA ligase:
tRNAasp + L-aspartate + ATP→an L-aspartyl-[tRNAasp] + AMP + diphosphate (EC 6.1.1.12; 6.1.1.23)
Atu1153
Cysteine--tRNA ligase:
L-cysteine + a tRNACys + ATP→an L-cysteinyl-[tRNACys] + AMP + diphosphate (EC 6.1.1.16)
Atu1073
Glutamate--tRNA ligase:
L-glutamate + a tRNAglu + ATP→an L-glutamyl-[tRNAGlu] + AMP + diphosphate (EC 6.1.1.17)
Atu4474
Glutamine--tRNA ligase:
L-glutamine + a tRNAGln + ATP→an L-glutaminyl-[tRNAGln] + AMP + diphosphate (EC 6.1.1.18)
No genes
Glycine--tRNA ligase:
glycine + a tRNAGly + ATP→a glycyl-[tRNAGly] + AMP + diphosphate (EC 6.1.1.14)
Atu0639
Atu0644
Histidine--tRNA ligase:
L-histidine + a tRNAHis + ATP→an L-histidyl-[tRNAHis] + AMP + diphosphate (EC 6.1.1.21)
Atu0676
Isoleucine--tRNA ligase:
L-isoleucine + a tRNAIle + ATP→an L-isoleucyl-[tRNAIle] + AMP + diphosphate (EC 6.1.1.5)
Atu0686
Leucine--tRNA ligase:
L-leucine + a tRNALeu + ATP→an L-leucyl-[tRNALeu] + AMP + diphosphate (EC 6.1.1.4)
Atu2748
Lysine--tRNA ligase:
L-lysine + a tRNALys + ATP→an L-lysyl-[tRNALys] + AMP + diphosphate (EC 6.1.1.6)
Atu2554
Atu4473
Methionine--tRNA ligase:
elongator tRNAMet + L-methionine + ATP→an L-methionyl-[elongator tRNAMet] + AMP + diphosphate (EC 6.1.1.10)
Atu1496
Phenylalanine--tRNA ligase:
L-phenylalanine + a tRNAPhe + ATP→an L-phenylalanyl-[tRNAPhe] + AMP + diphosphate (EC 6.1.1.20)
Atu0258
Atu0259
Proline--tRNA ligase:
L-proline + a tRNAPro + ATP→an L-prolyl-[tRNAPro] + AMP + diphosphate (EC 6.1.1.15)
Atu1288
Methionine--tRNA ligase:
L-methionine + initiator tRNAMet + ATP→an L-methionyl-[initiator tRNAMet] + AMP + diphosphate (EC 6.1.1.10)
Atu1496
Serine--tRNA ligase:
L-serine + a tRNAser + ATP→an L-seryl-[tRNAser] + AMP + diphosphate (EC 6.1.1.11)
Atu1703
Threonine--tRNA ligase:
L-threonine + a tRNAThr + ATP→an L-threonyl-[tRNAThr] + AMP + diphosphate (EC 6.1.1.3)
Atu1746
Tryptophan--tRNA ligase:
L-tryptophan + a tRNATrp + ATP→an L-tryptophanyl-[tRNATrp] + AMP + diphosphate (EC 6.1.1.2)
Atu0349
Tyrosine--tRNA ligase:
L-tyrosine + a tRNATyr + ATP→an L-tyrosyl-[tRNATyr] + AMP + diphosphate (EC 6.1.1.1)
Atu1828
Valine--tRNA ligase:
L-valine + a tRNAVal + ATP→an L-valyl-[tRNAVal] + AMP + diphosphate (EC 6.1.1.9)
Atu1719

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information