MetaCyc Pathway: aerobic respiration I (cytochrome c) in Agrobacterium fabrum C58

MetaCyc Pathway: aerobic respiration I (cytochrome c) in Agrobacterium fabrum C58

NADH_[in] + 5 H⁺_[in] + a ubiquinone→a ubiquinol + NAD⁺_[in] + 4 H⁺_[out] (EC 7.1.1.2)

Succinate dehydrogenase (ubiquinone):
succinate_[in] + a ubiquinone→a ubiquinol + fumarate_[in] (EC 1.3.5.1)

a ubiquinol + 2 an oxidized c-type cytochrome_[out] + 2 H⁺_[in]→2 a reduced c-type cytochrome_[out] + 4 H⁺_[out] + a ubiquinone (EC 7.1.1.8)

No genes

4 a reduced c-type cytochrome_[out] + dioxygen_[in] + 8 H⁺_[in]→2 H₂O_[in] + 4 an oxidized c-type cytochrome_[out] + 4 H⁺_[out] (EC 7.1.1.9)

Links:

Pathway details at MetaCyc
Fitness data for 25 genes
Select organism:
All MetaCyc pathways for Agrobacterium fabrum C58

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information