MetaCyc Pathway: glycogen degradation II in Pseudomonas putida KT2440

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Reactions and Genes Adaptation in M9 media timecourse 4; day 3
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Phosphorylase:
a glycogen + n phosphate→an α-limit dextrin + n α-D-glucopyranose 1-phosphate (EC 2.4.1.1)
PP_5041 -1.2
Amylo-alpha-1,6-glucosidase:
an α-limit dextrin→a debranched α-limit dextrin (EC 3.2.1.33)
No genes
Glucan 1,4-alpha-glucosidase:
a debranched α-limit dextrin + n H2O→n D-glucopyranose (EC 3.2.1.3)
PP_4041 +0.1
Phosphorylase:
a debranched α-limit dextrin + n phosphate→n α-D-glucopyranose 1-phosphate (EC 2.4.1.1)
PP_5041 -1.2
Hexokinase:
D-glucopyranose + ATP→D-glucopyranose 6-phosphate + ADP + H+ (EC 2.7.1.1; 2.7.1.2)
PP_1011 -1.1
Phosphoglucomutase:
α-D-glucopyranose 1-phosphate→D-glucopyranose 6-phosphate (EC 5.4.2.2)
PP_1777 +0.0
PP_3578 +0.0
PP_4716 N.D.
PP_5288 +0.2

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information