MetaCyc Pathway: formate to nitrite electron transfer in Escherichia coli BW25113
| Reactions and Genes | LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM |
|---|---|
| remove | |
| formate[out] + a menaquinone + 2 H+[in]→a menaquinol + CO2[out] + H+[out] (EC 1.17.5.3) | |
| b1474 (fdnG) | +0.4 |
| b1475 (fdnH) | -0.2 |
| b1476 (fdnI) | -1.1 |
| b3892 (fdoI) | +1.4 |
| b3893 (fdoH) | +1.3 |
| b3894 (fdoG) | +1.1 |
| a menaquinol + 2 an oxidized [NrfB protein][out]→2 a reduced [NrfB protein][out] + a menaquinone + 2 H+[out] (EC 7.1.1.8) | |
| No genes | |
| Nitrite reductase (cytochrome; ammonia-forming): 6 a reduced [NrfB protein][out] + nitrite[out] + 8 H+[out]→6 an oxidized [NrfB protein][out] + ammonium[out] + 2 H2O[out] (EC 1.7.2.2) | |
| b4070 (nrfA) | -0.1 |
| b4071 (nrfB) | -0.2 |
| b4072 (nrfC) | +0.2 |
| b4073 (nrfD) | -0.3 |
Links:
- Pathway details at MetaCyc
- Fitness data for 10 genes
- All MetaCyc pathways for Escherichia coli BW25113
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information