MetaCyc Pathway: L-lysine degradation IV in Pseudomonas simiae WCS417

Reactions and Genes	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Lysine 2-monooxygenase: L-lysine + dioxygen→5-aminopentanamide + CO2 + H2O (EC 1.13.12.2)
PS417_25910	+1.0
5-aminopentanamidase: 5-aminopentanamide + H2O→5-aminopentanoate + ammonium (EC 3.5.1.30)
PS417_25915	+0.4
5-aminovalerate transaminase: 5-aminopentanoate + 2-oxoglutarate→glutarate semialdehyde + L-glutamate (EC 2.6.1.48)
PS417_00900	+0.3
Glutarate-semialdehyde dehydrogenase: glutarate semialdehyde + NADP+ + H2O→glutarate + NADPH + 2 H+ (EC 1.2.1.20)
PS417_00895	+0.9
PS417_18705	+0.1
Succinate--hydroxymethylglutarate CoA-transferase: glutarate + succinyl-CoA→glutaryl-CoA + succinate (EC 2.8.3.13)
PS417_00585	-0.7

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information