MetaCyc Pathway: photorespiration II in Pseudomonas putida KT2440

Reactions and Genes	Cholinium lysinate (C)
D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase: 2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
PP_0094	+0.2
PP_0416	+0.2
PP_1764	-1.2
PP_1907	-0.1
Glycolate dehydrogenase: glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)
PP_3745	-0.1
PP_3746	+0.3
PP_3747	-0.0
PP_4493	-0.7
Glycine transaminase (in reverse): glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase: glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
PP_5194	-0.1
PP_5366	-0.2
Glycerate dehydrogenase (in reverse): 3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
PP_0762	-0.1
PP_1707	+0.1
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
PP_3178	-0.3
Glycine hydroxymethyltransferase (in reverse): glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
PP_0322	-3.1
PP_0671	N.D.
PP_0672	-0.2
2-phospho-D-glycerate→3-phospho-D-glycerate (EC 5.4.2.12)
PP_5056	N.D.

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information