MetaCyc Pathway: L-citrulline biosynthesis in Agrobacterium fabrum C58

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Reactions and Genes Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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Arginase:
L-arginine + H2O→L-ornithine + urea (EC 3.5.3.1)
Atu4007 -0.3
Atu6018 -0.2
Glutamate synthase (NADPH):
L-glutamine + H2O→L-glutamate + ammonia + H+ (EC 1.4.1.13; 1.4.1.14; 1.4.7.1; 2.6.1.85; 3.5.1.2; 3.5.1.38; 4.1.3.27; 4.3.2.10; 4.3.3.6; 6.3.4.2; 6.3.5.13; 6.3.5.2; 6.3.5.4; 6.3.5.5; 6.3.5.6; 6.3.5.7)
Atu0145 -0.1
Atu0281 N.D.
Atu0930 -0.0
Atu1154 +0.3
Atu1318 N.D.
Atu1319 N.D.
Atu1324 N.D.
Atu1618 N.D.
Atu1676 +0.3
Atu1859 +0.0
Atu2170 N.D.
Atu2178 N.D.
Atu2289 -4.0
Atu2658 +0.2
Atu3243 +0.1
Atu3369 +0.5
Atu3640 +0.1
Atu3783 -0.1
Atu3784 -0.2
Atu4228 -0.0
Atu4229 +0.2
Atu4441 +0.1
Atu4443 +0.5
Atu5476 -0.3
L-proline[in] + an electron-transfer quinone→(S)-1-pyrroline-5-carboxylate[in] + an electron-transfer quinol + H+[in] (EC 1.5.5.2)
Atu4157 -1.1
Glutamate 5-kinase:
L-glutamate + ATP→γ-L-glutamyl 5-phosphate + ADP (EC 2.7.2.11)
Atu2780 N.D.
(S)-1-pyrroline-5-carboxylate + H+ + H2O→L-glutamate 5-semialdehyde (spontaneous)
No genes
Glutamate-5-semialdehyde dehydrogenase (in reverse):
γ-L-glutamyl 5-phosphate + NADPH + H+→L-glutamate 5-semialdehyde + NADP+ + phosphate (EC 1.2.1.41)
Atu2779 N.D.
Ornithine aminotransferase (in reverse):
L-glutamate + L-glutamate 5-semialdehyde→L-ornithine + 2-oxoglutarate (EC 2.6.1.13)
No genes
Ornithine carbamoyltransferase:
L-ornithine + carbamoyl phosphate→L-citrulline + H+ + phosphate (EC 2.1.3.3)
Atu0429 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information