| Reactions and Genes | Ying_all64 rep B; time point 3 |
|---|
| remove |
| a 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2,3,4-saturated fatty acyl CoA + AMP + diphosphate |
| No genes |
Dodecenoyl-CoA isomerase:
a (3Z)-3-enoyl-CoA→a (2E)-2-enoyl-CoA (EC 5.3.3.8) |
| ABIE41_RS07780 | -0.0 |
3-hydroxybutyryl-CoA epimerase:
a 2,3,4-saturated (3R)-3-hydroxyacyl-CoA→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA (EC 5.1.2.3) |
| ABIE41_RS07780 | -0.0 |
| ABIE41_RS23310 | -0.2 |
| a 2,3,4-saturated fatty acyl CoA + an oxidized electron-transfer flavoprotein + H+→a (2E)-2-enoyl-CoA + a reduced electron-transfer flavoprotein |
| No genes |
Enoyl-CoA hydratase (in reverse):
a (2E)-2-enoyl-CoA + H2O→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA (EC 4.2.1.17) |
| ABIE41_RS04195 | -0.5 |
| ABIE41_RS07775 | -0.0 |
| ABIE41_RS07780 | -0.0 |
| ABIE41_RS10405 | -0.1 |
| ABIE41_RS16295 | +0.4 |
| ABIE41_RS17285 | -0.6 |
| ABIE41_RS18700 | -0.3 |
| ABIE41_RS19240 | +0.2 |
| ABIE41_RS19820 | -1.1 |
| ABIE41_RS20600 | N.D. |
| ABIE41_RS23310 | -0.2 |
3-hydroxyacyl-CoA dehydrogenase:
a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA + NAD+→a 2,3,4-saturated 3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.35) |
| ABIE41_RS07780 | -0.0 |
| ABIE41_RS12780 | +0.0 |
| ABIE41_RS18595 | -0.2 |
| ABIE41_RS23310 | -0.2 |
Acetyl-CoA C-acyltransferase (in reverse):
a 2,3,4-saturated 3-oxoacyl-CoA + coenzyme A→a 2,3,4-saturated fatty acyl CoA + acetyl-CoA (EC 2.3.1.16) |
| ABIE41_RS07785 | -1.6 |
| ABIE41_RS07970 | +0.3 |
| ABIE41_RS08710 | N.D. |
| ABIE41_RS23315 | -0.4 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information