MetaCyc Pathway: superpathway of pyrimidine deoxyribonucleosides degradation in Agrobacterium fabrum C58

Add experiment(s):


Reactions and Genes R2A with Vancomycin 0.009 mM
remove
Cytidine deaminase:
2'-deoxycytidine + H+ + H2O→2'-deoxyuridine + ammonium (EC 3.5.4.5)
Atu0130 -0.1
Pyrimidine-nucleoside phosphorylase:
thymidine + phosphate→2-deoxy-α-D-ribose 1-phosphate + thymine (EC 2.4.2.2; 2.4.2.4)
Atu0133 -0.1
Pyrimidine-nucleoside phosphorylase:
2'-deoxyuridine + phosphate→2-deoxy-α-D-ribose 1-phosphate + uracil (EC 2.4.2.2; 2.4.2.3)
Atu0131 +0.0
Atu0133 -0.1
Atu0645 -0.4
Phosphopentomutase:
2-deoxy-α-D-ribose 1-phosphate→2-deoxy-D-ribose 5-phosphate (EC 5.4.2.7)
Atu0137 -1.5
Deoxyribose-phosphate aldolase:
2-deoxy-D-ribose 5-phosphate→acetaldehyde + D-glyceraldehyde 3-phosphate (EC 4.1.2.4)
Atu0132 +0.1
Atu4848 -0.1
Acetaldehyde dehydrogenase (acetylating):
acetaldehyde + coenzyme A + NAD+→acetyl-CoA + NADH + H+ (EC 1.2.1.10)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information