MetaCyc Pathway: photorespiration II in Variovorax sp. OAS795

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Reactions and Genes V2_100
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D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
ABID97_RS12845 +0.6
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
ABID97_RS05240 -0.0
ABID97_RS07650 +0.6
ABID97_RS08255 +0.3
ABID97_RS09545 +0.4
ABID97_RS12870 N.D.
ABID97_RS13695 +0.6
Glycolate dehydrogenase:
glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)
ABID97_RS03650 +0.1
ABID97_RS03655 +2.3
ABID97_RS03660 +0.3
ABID97_RS15850 -0.1
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
ABID97_RS15840 -0.4
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
No genes
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
No genes
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
No genes
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
ABID97_RS17890 N.D.
2-phospho-D-glycerate→3-phospho-D-glycerate (EC 5.4.2.12)
ABID97_RS06495 +2.2
ABID97_RS07385 N.D.
ABID97_RS23825 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information