MetaCyc Pathway: glycolate and glyoxylate degradation III in Escherichia coli BW25113

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Reactions and Genes Ying_sugar7 rep B; time point 3
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Glycolate dehydrogenase:
glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)
b1687 (ydiJ) -1.1
b2979 (glcD) -0.2
b4467 (glcF) -0.4
b4468 (glcE) +0.1
3-hydroxyaspartate aldolase (in reverse):
glyoxylate + glycine→(3R)-3-hydroxy-L-aspartate (EC 4.1.3.14)
No genes
Erythro-3-hydroxyaspartate ammonia-lyase:
(3R)-3-hydroxy-L-aspartate→oxaloacetate + ammonium (EC 4.3.1.20)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information