MetaCyc Pathway: L-lysine degradation I in Pseudomonas simiae WCS417

Reactions and Genes	Paraquat dichloride 0.008 mg/ml
Lysine decarboxylase: L-lysine + H+→cadaverine + CO2 (EC 4.1.1.18)
PS417_04005	-0.0
Putrescine aminotransferase: cadaverine + 2-oxoglutarate→5-aminopentanal + L-glutamate (EC 2.6.1.82)
No genes
Aminobutyraldehyde dehydrogenase: 5-aminopentanal + NAD+ + H2O→5-aminopentanoate + NADH + 2 H+ (EC 1.2.1.19)
PS417_05920	+0.2
PS417_05945	+0.4
5-aminovalerate transaminase: 2-oxoglutarate + 5-aminopentanoate→glutarate semialdehyde + L-glutamate (EC 2.6.1.48)
PS417_00900	+2.9
Glutarate-semialdehyde dehydrogenase: glutarate semialdehyde + NADP+ + H2O→glutarate + NADPH + 2 H+ (EC 1.2.1.20)
PS417_00895	+1.2
PS417_18705	+0.1
2-oxoglutarate + glutarate + dioxygen→(S)-2-hydroxyglutarate + CO2 + succinate (EC 1.14.11.64)
No genes
(S)-2-hydroxyglutarate + an electron-transfer quinone→2-oxoglutarate + an electron-transfer quinol (EC 1.1.5.13)
No genes

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information