MetaCyc Pathway: photorespiration I in Pseudomonas putida KT2440

Reactions and Genes	Geraniol 1 vol%
D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase: 2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
PP_0094	+0.0
PP_0416	+0.2
PP_1764	-0.5
PP_1907	+0.2
(S)-2-hydroxy-acid oxidase: glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)
PP_2910	+0.0
PP_3745	-0.1
PP_4493	+0.1
Glycine transaminase (in reverse): glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase: glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
PP_5194	+0.2
PP_5366	-0.0
Glycerate dehydrogenase (in reverse): 3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
PP_0762	-0.1
PP_1707	+0.2
Glycerate kinase: D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
PP_1212	N.D.
PP_2381	N.D.
PP_3134	-0.1
PP_3178	-0.2
PP_3962	-0.0
PP_4300	+0.1
Glycine hydroxymethyltransferase (in reverse): glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
PP_0322	-0.3
PP_0671	N.D.
PP_0672	-1.4

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information