MetaCyc Pathway: valproate β-oxidation in Pseudomonas putida KT2440

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Reactions and Genes L-Phenylalanine 5 mM (C)
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Butyrate--CoA ligase:
valproate + ATP + coenzyme A→valproyl-CoA + AMP + diphosphate (EC 6.2.1.2)
No genes
valproyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E)-2-propylpent-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.5)
PP_3492 +0.1
Enoyl-CoA hydratase (in reverse):
(2E)-2-propylpent-2-enoyl-CoA + H2O→(3S)-3-hydroxy-2-propylpentanoyl-CoA (EC 4.2.1.17)
PP_1412 +0.0
PP_1845 -0.4
PP_2047 -0.0
PP_2136 -0.4
PP_2217 -1.8
PP_3283 +0.2
PP_3284 +0.3
PP_3358 +0.1
PP_3491 -0.0
PP_3726 +0.1
PP_3732 +0.1
PP_4030 -0.1
3-hydroxyacyl-CoA dehydrogenase:
(3S)-3-hydroxy-2-propylpentanoyl-CoA + NAD+→3-oxo-2-propylpentanoyl-CoA + NADH + H+ (EC 1.1.1.35)
PP_2047 -0.0
PP_2136 -0.4
Acetyl-CoA C-acyltransferase (in reverse):
3-oxo-2-propylpentanoyl-CoA + coenzyme A→pentanoyl-CoA + propanoyl-CoA (EC 2.3.1.16)
PP_0582 -0.1
PP_1377 -3.7
PP_2051 +0.0
PP_2137 -0.4
PP_2215 +0.4
PP_3280 -0.2
PP_3355 -0.3
PP_3754 -0.5
PP_4636 -0.6
pentanoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E)-pent-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.1)
PP_4948 +0.0
(2E)-pent-2-enoyl-CoA + H2O→(3S)-3-hydroxypentanoyl-CoA
No genes
3-hydroxyacyl-CoA dehydrogenase:
(3S)-3-hydroxypentanoyl-CoA + NAD+→3-oxopentanoyl-CoA + NADH + H+ (EC 1.1.1.35)
PP_2047 -0.0
PP_2136 -0.4
Acetyl-CoA C-acyltransferase (in reverse):
3-oxopentanoyl-CoA + coenzyme A→propanoyl-CoA + acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
PP_0582 -0.1
PP_1377 -3.7
PP_2051 +0.0
PP_2137 -0.4
PP_2215 +0.4
PP_3280 -0.2
PP_3355 -0.3
PP_3754 -0.5
PP_4636 -0.6

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information